Stem-loop cfa-mir-99b

Accession

MI0008003

Description

Canis lupus familiaris cfa-mir-99b precursor miRNA

Literature search

5 open access papers mention cfa-mir-99b
(7 sentences)

Sequence

1450144 reads, 4416.0 reads per million, 82 experiments

CACCCGUAGAACCGACCUUGCGgggccuucgccgcacaCAAGCUCGAGUCUGUGGGUCUG
.(((((((((..(((.((((.(.(((....))).)...)))).)))..)))))))))...

Structure

--C         AC   C    --C g   c 
   ACCCGUAGA  CGA CUUG   G ggc u
   |||||||||  ||| ||||   | |||  
   UGGGUGUCU  GCU GAAC   c ccg u
GUC         GA   C    aca g   c 

Annotation confidence High

Genome context

1: 105910842-105910901 [-]

Clustered miRNAs

2 other miRNAs are < 10 kb from cfa-mir-99b

Mature cfa-miR-99b-5p

• Accession: MIMAT0006607
• Description: Canis lupus familiaris cfa-miR-99b-5p mature miRNA
• Sequence: 1 - CACCCGUAGAACCGACCUUGCG - 22
• Evidence: experimental ; Illumina [1]

Mature cfa-miR-99b-3p

• Accession: MIMAT0051716
• Description: Canis lupus familiaris cfa-miR-99b-3p mature miRNA
• Sequence: 39 - CAAGCUCGAGUCUGUGGGUCUG - 60
• Evidence: experimental ; Illumina [1]

References

1. PubMed ID: 18392026
   Discovering microRNAs from deep sequencing data using miRDeep
   "Friedlander MR, Chen W, Adamidi C, Maaskola J, Einspanier R, Knespel S, Rajewsky N"
   "Nat Biotechnol (2008) 26:407-415