miRBase entry: cfa-mir-99b

Stem-loop cfa-mir-99b

Accession

MI0008003

Description

Canis familiaris cfa-mir-99b precursor miRNA

Sequence

CACCCGUAGAACCGACCUUGCGgggccuucgccgcacacaagcucgagucugugggucug
.(((((((((..(((.((((.(.(((....))).)...)))).)))..)))))))))...

Structure

--C         AC   C    --C g   c 
   ACCCGUAGA  CGA CUUG   G ggc u
   |||||||||  ||| ||||   | |||  
   ugggugucu  gcu gaac   c ccg u
guc         ga   c    aca g   c

Annotation confidence Not enough data

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Genome context

chr1: 105400925-105400984 [-]

Clustered miRNAs

2 other miRNAs are < 10 kb from cfa-mir-99b

Name	Accession	Chromosome	Start	End	Strand	Confidence

Database links

Mature cfa-miR-99b

Accession	MIMAT0006607
Description	Canis familiaris cfa-miR-99b mature miRNA
Sequence	1 - CACCCGUAGAACCGACCUUGCG - 22
Evidence	experimental Illumina [1]

References

PubMed ID: 18392026
Discovering microRNAs from deep sequencing data using miRDeep
"Friedlander MR, Chen W, Adamidi C, Maaskola J, Einspanier R, Knespel S, Rajewsky N"
"Nat Biotechnol (2008) 26:407-415