Stem-loop cfa-let-7e

Accession

MI0008004

Description

Canis lupus familiaris cfa-let-7e precursor miRNA

Literature search

9 open access papers mention cfa-let-7e
(12 sentences)

Sequence

505972 reads, 969.0 reads per million, 82 experiments

UGAGGUAGGAGGUUGUAUAGUUgaggaggacacccacggagaucaCUAUACGGCCUCCUAGCUUUCC
.(((.((((((((((((((((.((...(........).....)))))))))))))))))).)))...

Structure

--U   G                U  --gga gac 
   GAG UAGGAGGUUGUAUAGU ga     g   a
   ||| |||||||||||||||| ||     |    
   UUC AUCCUCCGGCAUAUCa cu     c   c
CCU   G                -  agagg acc 

Annotation confidence High

Genome context

1: 105910657-105910723 [-]

Clustered miRNAs

2 other miRNAs are < 10 kb from cfa-let-7e

Mature cfa-let-7e-5p

• Accession: MIMAT0006608
• Description: Canis lupus familiaris cfa-let-7e-5p mature miRNA
• Sequence: 1 - UGAGGUAGGAGGUUGUAUAGUU - 22
• Evidence: experimental ; Illumina [1]

Mature cfa-let-7e-3p

• Accession: MIMAT0051717
• Description: Canis lupus familiaris cfa-let-7e-3p mature miRNA
• Sequence: 46 - CUAUACGGCCUCCUAGCUUUCC - 67
• Evidence: experimental ; Illumina [1]

References

1. PubMed ID: 18392026
   Discovering microRNAs from deep sequencing data using miRDeep
   "Friedlander MR, Chen W, Adamidi C, Maaskola J, Einspanier R, Knespel S, Rajewsky N"
   "Nat Biotechnol (2008) 26:407-415