Stem-loop cfa-mir-125a

Accession

MI0008005

Description

Canis lupus familiaris cfa-mir-125a precursor miRNA

Literature search

9 open access papers mention cfa-mir-125a
(13 sentences)

Sequence

2150932 reads, 5944.0 reads per million, 82 experiments

UCCCUGAGACCCUUUAACCUGUGAggacauccagggucACAGGUGAGGUUCUUGGGAGCC
((((.((((.((((..((((((((((....))....)))))))))))).))))))))...

Structure

---    U    C    UA        ----  a 
   UCCC GAGA CCUU  ACCUGUGA    gg c
   |||| |||| ||||  ||||||||    ||  
   AGGG UUCU GGAG  UGGACAcu    cc a
CCG    -    U    --        ggga  u 

Annotation confidence High

Genome context

1: 105910190-105910249 [-]

Clustered miRNAs

2 other miRNAs are < 10 kb from cfa-mir-125a

Mature cfa-miR-125a-5p

• Accession: MIMAT0006609
• Description: Canis lupus familiaris cfa-miR-125a-5p mature miRNA
• Sequence: 1 - UCCCUGAGACCCUUUAACCUGUGA - 24
• Evidence: experimental ; Illumina [1]

Mature cfa-miR-125a-3p

• Accession: MIMAT0051718
• Description: Canis lupus familiaris cfa-miR-125a-3p mature miRNA
• Sequence: 39 - ACAGGUGAGGUUCUUGGGAGCC - 60
• Evidence: experimental ; Illumina [1]

References

1. PubMed ID: 18392026
   Discovering microRNAs from deep sequencing data using miRDeep
   "Friedlander MR, Chen W, Adamidi C, Maaskola J, Einspanier R, Knespel S, Rajewsky N"
   "Nat Biotechnol (2008) 26:407-415