Stem-loop cfa-let-7f

Accession

MI0008006

Description

Canis lupus familiaris cfa-let-7f precursor miRNA

Literature search

13 open access papers mention cfa-let-7f
(34 sentences)

Sequence

19527796 reads, 16491.0 reads per million, 82 experiments

UGAGGUAGUAGAUUGUAUAGUUgugggguagugauuuuacccuguucaggagauaaCUAUACAAUCUAUUGCCUUCCc
.((((((((((((((((((((((((((((((.....))))))).........)))))))))))))))))))))))...

Structure

--U                       ---------       u 
   GAGGUAGUAGAUUGUAUAGUUgu         gggguag g
   |||||||||||||||||||||||         ||||||| a
   UUCCGUUAUCUAACAUAUCaaua         ucccauu u
cCC                       gaggacuug       u 

Annotation confidence High

Genome context

1: 98521205-98521282 [-]

Clustered miRNAs

1 other miRNA is < 10 kb from cfa-let-7f

Mature cfa-let-7f-5p

• Accession: MIMAT0006610
• Description: Canis lupus familiaris cfa-let-7f-5p mature miRNA
• Sequence: 1 - UGAGGUAGUAGAUUGUAUAGUU - 22
• Evidence: experimental ; Illumina [1]

Mature cfa-let-7f-3p

• Accession: MIMAT0051719
• Description: Canis lupus familiaris cfa-let-7f-3p mature miRNA
• Sequence: 57 - CUAUACAAUCUAUUGCCUUCC - 77
• Evidence: experimental ; Illumina [1]

References

1. PubMed ID: 18392026
   Discovering microRNAs from deep sequencing data using miRDeep
   "Friedlander MR, Chen W, Adamidi C, Maaskola J, Einspanier R, Knespel S, Rajewsky N"
   "Nat Biotechnol (2008) 26:407-415