Stem-loop cfa-mir-27b

Accession

MI0008009

Description

Canis lupus familiaris cfa-mir-27b precursor miRNA

Literature search

7 open access papers mention cfa-mir-27b
(74 sentences)

Sequence

16524368 reads, 32267.0 reads per million, 82 experiments

AGAGCUUAGCUGAUUGGUGAACAGugacugguuuccgcuuugUUCACAGUGGCUAAGUUCUGC
(((((((((((.((((.(((((((....(((...)))..))))))))))))))))))))))..

Structure

--           G    G       ugac   u 
  AGAGCUUAGCU AUUG UGAACAG    ugg  
  ||||||||||| |||| |||||||    ||| u
  UCUUGAAUCGG UGAC ACUUguu    gcc  
CG           -    -       --uc   u 

Annotation confidence High

Genome context

1: 71982476-71982538 [-]

Clustered miRNAs

2 other miRNAs are < 10 kb from cfa-mir-27b

Mature cfa-miR-27b-5p

• Accession: MIMAT0051721
• Description: Canis lupus familiaris cfa-miR-27b-5p mature miRNA
• Sequence: 1 - AGAGCUUAGCUGAUUGGUGAACAG - 24
• Evidence: experimental ; Illumina [1]

Mature cfa-miR-27b-3p

• Accession: MIMAT0006613
• Description: Canis lupus familiaris cfa-miR-27b-3p mature miRNA
• Sequence: 43 - UUCACAGUGGCUAAGUUCUGC - 63
• Evidence: experimental ; Illumina [1]

References

1. PubMed ID: 18392026
   Discovering microRNAs from deep sequencing data using miRDeep
   "Friedlander MR, Chen W, Adamidi C, Maaskola J, Einspanier R, Knespel S, Rajewsky N"
   "Nat Biotechnol (2008) 26:407-415