Stem-loop cfa-mir-24-1

Accession

MI0008010

Description

Canis lupus familiaris cfa-mir-24-1 precursor miRNA

Literature search

2 open access papers mention cfa-mir-24-1
(7 sentences)

Sequence

2503235 reads, 4781.0 reads per million, 82 experiments

gGUGCCUACUGAGCUGAUAUCAGuucucauuguacacacUGGCUCAGUUCAGCAGGAACAGG
.((.(((.(((((((((..(((((.............))))).))))))))).))).))...

Structure

--g  G   A         UA     ucuca 
   GU CCU CUGAGCUGA  UCAGu     u
   || ||| |||||||||  |||||     u
   CA GGA GACUUGACU  GGUca     g
GGA  A   C         -C     cacau 

Annotation confidence High

Genome context

1: 71981967-71982028 [-]

Clustered miRNAs

2 other miRNAs are < 10 kb from cfa-mir-24-1

Mature cfa-miR-24-1-5p

• Accession: MIMAT0051722
• Description: Canis lupus familiaris cfa-miR-24-1-5p mature miRNA
• Sequence: 2 - GUGCCUACUGAGCUGAUAUCAG - 23
• Evidence: experimental ; Illumina [1]

Mature cfa-miR-24-3p

• Accession: MIMAT0006614
• Description: Canis lupus familiaris cfa-miR-24-3p mature miRNA
• Sequence: 40 - UGGCUCAGUUCAGCAGGAACAGG - 62
• Evidence: experimental ; Illumina [1]

References

1. PubMed ID: 18392026
   Discovering microRNAs from deep sequencing data using miRDeep
   "Friedlander MR, Chen W, Adamidi C, Maaskola J, Einspanier R, Knespel S, Rajewsky N"
   "Nat Biotechnol (2008) 26:407-415