Stem-loop cfa-mir-30d

Accession

MI0008012

Description

Canis lupus familiaris cfa-mir-30d precursor miRNA

Literature search

9 open access papers mention cfa-mir-30d
(15 sentences)

Sequence

9285631 reads, 13386.0 reads per million, 82 experiments

UGUAAACAUCCCCGACUGGAAGCUggaagacagcaaagCUUUCAGUCAGAUGUUUGCUGC
.(((((((((...(((((((((((............))))))))))).)))))))))...

Structure

--U         CCC           ggaag 
   GUAAACAUC   GACUGGAAGCU     a
   |||||||||   |||||||||||      
   CGUUUGUAG   CUGACUUUCga     c
CGU         --A           aacga 

Annotation confidence High

Genome context

13: 31276123-31276182 [-]

Clustered miRNAs

1 other miRNA is < 10 kb from cfa-mir-30d

Mature cfa-miR-30d-5p

• Accession: MIMAT0006616
• Description: Canis lupus familiaris cfa-miR-30d-5p mature miRNA
• Sequence: 1 - UGUAAACAUCCCCGACUGGAAGCU - 24
• Evidence: experimental ; Illumina [1]

Mature cfa-miR-30d-3p

• Accession: MIMAT0051725
• Description: Canis lupus familiaris cfa-miR-30d-3p mature miRNA
• Sequence: 39 - CUUUCAGUCAGAUGUUUGCUGC - 60
• Evidence: experimental ; Illumina [1]

References

1. PubMed ID: 18392026
   Discovering microRNAs from deep sequencing data using miRDeep
   "Friedlander MR, Chen W, Adamidi C, Maaskola J, Einspanier R, Knespel S, Rajewsky N"
   "Nat Biotechnol (2008) 26:407-415