Stem-loop cfa-mir-30b

Accession

MI0008013

Description

Canis lupus familiaris cfa-mir-30b precursor miRNA

Literature search

4 open access papers mention cfa-mir-30b
(7 sentences)

Sequence

1878528 reads, 2832.0 reads per million, 82 experiments

UGUAAACAUCCUACACUCAGCUguaguacauggauuggCUGGGAGGUGGAUGUUUACUUC
.((((((((((.((.((((((((............))))))))..))))))))))))...

Structure

--U          U  -A        uagua 
   GUAAACAUCC AC  CUCAGCUg     c
   |||||||||| ||  ||||||||      
   CAUUUGUAGG UG  GGGUCggu     a
CUU          -  GA        uaggu 

Annotation confidence High

Genome context

13: 31271855-31271914 [-]

Clustered miRNAs

1 other miRNA is < 10 kb from cfa-mir-30b

Mature cfa-miR-30b-5p

• Accession: MIMAT0006617
• Description: Canis lupus familiaris cfa-miR-30b-5p mature miRNA
• Sequence: 1 - UGUAAACAUCCUACACUCAGCU - 22
• Evidence: experimental ; Illumina [1]

Mature cfa-miR-30b-3p

• Accession: MIMAT0051726
• Description: Canis lupus familiaris cfa-miR-30b-3p mature miRNA
• Sequence: 39 - CUGGGAGGUGGAUGUUUACUUC - 60
• Evidence: experimental ; Illumina [1]

References

1. PubMed ID: 18392026
   Discovering microRNAs from deep sequencing data using miRDeep
   "Friedlander MR, Chen W, Adamidi C, Maaskola J, Einspanier R, Knespel S, Rajewsky N"
   "Nat Biotechnol (2008) 26:407-415