Stem-loop cfa-mir-1836

Accession

MI0008014

Description

Canis lupus familiaris cfa-mir-1836 precursor miRNA

Sequence

9598 reads, 15.0 reads per million, 63 experiments

UAGGCCAUGGUAGAUAGAGAUGgaguaaccauuucaucuCAUCUGCACUGCCCAGAC
..(((....((((((.((((((((((....))))))))))))))))...))).....

Structure

---UA   CAUG      A          a 
     GGC    GUAGAU GAGAUGgagu a
     |||    |||||| ||||||||||  
     CCG    CGUCUA Cucuacuuua c
CAGAC   -UCA      -          c 

Annotation confidence Low

Genome context

1: 49215332-49215388 [-]

Mature cfa-miR-1836-5p

• Accession: MIMAT0006618
• Description: Canis lupus familiaris cfa-miR-1836-5p mature miRNA
• Sequence: 1 - UAGGCCAUGGUAGAUAGAGAUG - 22
• Evidence: experimental ; Illumina [1]

Mature cfa-miR-1836-3p

• Accession: MIMAT0051727
• Description: Canis lupus familiaris cfa-miR-1836-3p mature miRNA
• Sequence: 40 - CAUCUGCACUGCCCAGAC - 57
• Evidence: experimental ; Illumina [1]

References

1. PubMed ID: 18392026
   Discovering microRNAs from deep sequencing data using miRDeep
   "Friedlander MR, Chen W, Adamidi C, Maaskola J, Einspanier R, Knespel S, Rajewsky N"
   "Nat Biotechnol (2008) 26:407-415