Stem-loop cfa-mir-196b

Accession

MI0008016

Description

Canis lupus familiaris cfa-mir-196b precursor miRNA

Literature search

2 open access papers mention cfa-mir-196b
(2 sentences)

Sequence

98456 reads, 103.0 reads per million, 72 experiments

UAGGUAGUUUCCUGUUGUUGGGauccaccuuucucUCGACAGCACGACACUGCCUUCA
.(((((((.((.(((((((((((..........))))))))))).)).)))))))...

Structure

--U       U  C           ucca 
   AGGUAGU UC UGUUGUUGGGa    c
   ||||||| || |||||||||||     
   UCCGUCA AG ACGACAGCUcu    c
ACU       C  C           cuuu 

Annotation confidence High

Genome context

14: 40282662-40282719 [-]

Mature cfa-miR-196b-5p

• Accession: MIMAT0006620
• Description: Canis lupus familiaris cfa-miR-196b-5p mature miRNA
• Sequence: 1 - UAGGUAGUUUCCUGUUGUUGGG - 22
• Evidence: experimental ; Illumina [1]

Mature cfa-miR-196b-3p

• Accession: MIMAT0051729
• Description: Canis lupus familiaris cfa-miR-196b-3p mature miRNA
• Sequence: 36 - UCGACAGCACGACACUGCCUUCA - 58
• Evidence: experimental ; Illumina [1]

References

1. PubMed ID: 18392026
   Discovering microRNAs from deep sequencing data using miRDeep
   "Friedlander MR, Chen W, Adamidi C, Maaskola J, Einspanier R, Knespel S, Rajewsky N"
   "Nat Biotechnol (2008) 26:407-415