miRBase entry: cfa-mir-183

Stem-loop cfa-mir-183

Accession

MI0008017

Description

Canis familiaris cfa-mir-183 precursor miRNA

Gene family

MIPF0000066; mir-183

Sequence

UAUGGCACUGGUAGAAUUCACUgugaacagucucggucagugaauuaccgaagggccauaaa
((((((.((((((..(((((((((((......)))..))))))))))))..)).))))))..

Structure

--      A  --    GA        --   ac 
  UAUGGC CU  GGUA  AUUCACUg  uga  a
  |||||| ||  ||||  ||||||||  |||   
  auaccg ga  ccau  uaagugac  gcu  g
aa      g  ag    --        ug   cu

Annotation confidence Not enough data

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Genome context

chr14: 7068542-7068603 [+]

Clustered miRNAs

2 other miRNAs are < 10 kb from cfa-mir-183

Name	Accession	Chromosome	Start	End	Strand	Confidence

Database links

Mature cfa-miR-183

Accession	MIMAT0006621
Description	Canis familiaris cfa-miR-183 mature miRNA
Sequence	1 - UAUGGCACUGGUAGAAUUCACU - 22
Evidence	experimental Illumina [1]

References

PubMed ID: 18392026
Discovering microRNAs from deep sequencing data using miRDeep
"Friedlander MR, Chen W, Adamidi C, Maaskola J, Einspanier R, Knespel S, Rajewsky N"
"Nat Biotechnol (2008) 26:407-415