Stem-loop cfa-mir-183

Accession

MI0008017

Description

Canis lupus familiaris cfa-mir-183 precursor miRNA

Literature search

5 open access papers mention cfa-mir-183
(15 sentences)

Sequence

240701 reads, 791.0 reads per million, 80 experiments

UAUGGCACUGGUAGAAUUCACUgugaacagucucggucagUGAAUUACCGAAGGGCCAUAAA
((((((.((((((..(((((((((((......)))..))))))))))))..)).))))))..

Structure

--      A  --    GA        --   ac 
  UAUGGC CU  GGUA  AUUCACUg  uga  a
  |||||| ||  ||||  ||||||||  |||   
  AUACCG GA  CCAU  UAAGUgac  gcu  g
AA      G  AG    --        ug   cu 

Annotation confidence High

Genome context

14: 6831541-6831602 [+]

Clustered miRNAs

2 other miRNAs are < 10 kb from cfa-mir-183

Mature cfa-miR-183-5p

• Accession: MIMAT0006621
• Description: Canis lupus familiaris cfa-miR-183-5p mature miRNA
• Sequence: 1 - UAUGGCACUGGUAGAAUUCACU - 22
• Evidence: experimental ; Illumina [1]

Mature cfa-miR-183-3p

• Accession: MIMAT0051730
• Description: Canis lupus familiaris cfa-miR-183-3p mature miRNA
• Sequence: 41 - UGAAUUACCGAAGGGCCAUAAA - 62
• Evidence: experimental ; Illumina [1]

References

1. PubMed ID: 18392026
   Discovering microRNAs from deep sequencing data using miRDeep
   "Friedlander MR, Chen W, Adamidi C, Maaskola J, Einspanier R, Knespel S, Rajewsky N"
   "Nat Biotechnol (2008) 26:407-415