Stem-loop cfa-mir-148a

Accession

MI0008018

Description

Canis lupus familiaris cfa-mir-148a precursor miRNA

Literature search

8 open access papers mention cfa-mir-148a
(11 sentences)

Sequence

135993865 reads, 68493.0 reads per million, 82 experiments

AAAGUUCUGAGACACUCCGACUcugaauaugauagaagUCAGUGCACUACAGAACUUUGU
(((((((((((.((((..(((((((.......))).))))))))..)).)))))))))..

Structure

--         -  -A    CC    -   aa 
  AAAGUUCUG AG  CACU  GACU cug  u
  ||||||||| ||  ||||  |||| |||  a
  UUUCAAGAC UC  GUGA  CUga gau  u
UG         A  AC    --    a   ag 

Annotation confidence High

Genome context

14: 39240693-39240752 [-]

Mature cfa-miR-148a-5p

• Accession: MIMAT0051731
• Description: Canis lupus familiaris cfa-miR-148a-5p mature miRNA
• Sequence: 1 - AAAGUUCUGAGACACUCCGACU - 22
• Evidence: experimental ; Illumina [1]

Mature cfa-miR-148a-3p

• Accession: MIMAT0006622
• Description: Canis lupus familiaris cfa-miR-148a-3p mature miRNA
• Sequence: 39 - UCAGUGCACUACAGAACUUUGU - 60
• Evidence: experimental ; Illumina [1]

References

1. PubMed ID: 18392026
   Discovering microRNAs from deep sequencing data using miRDeep
   "Friedlander MR, Chen W, Adamidi C, Maaskola J, Einspanier R, Knespel S, Rajewsky N"
   "Nat Biotechnol (2008) 26:407-415