Stem-loop cfa-mir-335

Accession

MI0008020

Description

Canis lupus familiaris cfa-mir-335 precursor miRNA

Literature search

9 open access papers mention cfa-mir-335
(10 sentences)

Sequence

159800 reads, 447.0 reads per million, 81 experiments

UCAAGAGCAAUAACGAAAAAUGUuugucauaaaccgUUUUUCAUUAUUGCUCCUGACC
(((.(((((((((.((((((((.((......)).)))))))).))))))))).)))..

Structure

--   A         C        U  gu 
  UCA GAGCAAUAA GAAAAAUG uu  c
  ||| ||||||||| |||||||| ||   
  AGU CUCGUUAUU CUUUUUgc aa  a
CC   C         A        c  au 

Annotation confidence High

Genome context

14: 6209133-6209190 [-]

Mature cfa-miR-335-5p

• Accession: MIMAT0006624
• Description: Canis lupus familiaris cfa-miR-335-5p mature miRNA
• Sequence: 1 - UCAAGAGCAAUAACGAAAAAUGU - 23
• Evidence: experimental ; Illumina [1]

Mature cfa-miR-335-3p

• Accession: MIMAT0051734
• Description: Canis lupus familiaris cfa-miR-335-3p mature miRNA
• Sequence: 37 - UUUUUCAUUAUUGCUCCUGACC - 58
• Evidence: experimental ; Illumina [1]

References

1. PubMed ID: 18392026
   Discovering microRNAs from deep sequencing data using miRDeep
   "Friedlander MR, Chen W, Adamidi C, Maaskola J, Einspanier R, Knespel S, Rajewsky N"
   "Nat Biotechnol (2008) 26:407-415