Stem-loop cfa-mir-29b-1

Accession

MI0008021

Description

Canis lupus familiaris cfa-mir-29b-1 precursor miRNA

Sequence

562939 reads, 1337.0 reads per million, 82 experiments

aGCUGGUUUCAUAUGGUGGUUUAGAuuuaaauagugauugucUAGCACCAUUUGAAAUCAGUGUU
.((((((((((.((((((..((((((.............)))))))))))).))))))))))...

Structure

--a          U      GU      uuaaa 
   GCUGGUUUCA AUGGUG  UUAGAu     u
   |||||||||| ||||||  ||||||     a
   UGACUAAAGU UACCAC  GAUcug     g
UUG          U      --      uuagu 

Annotation confidence High

Genome context

14: 5918648-5918712 [+]

Clustered miRNAs

1 other miRNA is < 10 kb from cfa-mir-29b-1

Mature cfa-miR-29b-1-5p

• Accession: MIMAT0051735
• Description: Canis lupus familiaris cfa-miR-29b-1-5p mature miRNA
• Sequence: 2 - GCUGGUUUCAUAUGGUGGUUUAGA - 25
• Evidence: experimental ; Illumina [1]

Mature cfa-miR-29b-3p

• Accession: MIMAT0006625
• Description: Canis lupus familiaris cfa-miR-29b-3p mature miRNA
• Sequence: 43 - UAGCACCAUUUGAAAUCAGUGUU - 65
• Evidence: experimental ; Illumina [1]

References

1. PubMed ID: 18392026
   Discovering microRNAs from deep sequencing data using miRDeep
   "Friedlander MR, Chen W, Adamidi C, Maaskola J, Einspanier R, Knespel S, Rajewsky N"
   "Nat Biotechnol (2008) 26:407-415