Stem-loop cfa-mir-29a

Accession

MI0008022

Description

Canis lupus familiaris cfa-mir-29a precursor miRNA

Literature search

19 open access papers mention cfa-mir-29a
(41 sentences)

Sequence

2138215 reads, 4030.0 reads per million, 82 experiments

ACUGAUUUCUUUUGGUGUUCAGagucaauauaauuuucUAGCACCAUCUGAAAUCGGUUA
(((((((((...(((((((.((((...........)))))))))))...)))))))))..

Structure

--         UUU       C    ucaa 
  ACUGAUUUC   UGGUGUU AGag    u
  |||||||||   ||||||| ||||    a
  UGGCUAAAG   ACCACGA Ucuu    u
AU         UCU       -    uuaa 

Annotation confidence High

Genome context

14: 5919035-5919094 [+]

Clustered miRNAs

1 other miRNA is < 10 kb from cfa-mir-29a

Mature cfa-miR-29a-5p

• Accession: MIMAT0051737
• Description: Canis lupus familiaris cfa-miR-29a-5p mature miRNA
• Sequence: 1 - ACUGAUUUCUUUUGGUGUUCAG - 22
• Evidence: experimental ; Illumina [1]

Mature cfa-miR-29a-3p

• Accession: MIMAT0006626
• Description: Canis lupus familiaris cfa-miR-29a-3p mature miRNA
• Sequence: 39 - UAGCACCAUCUGAAAUCGGUUA - 60
• Evidence: experimental ; Illumina [1]

References

1. PubMed ID: 18392026
   Discovering microRNAs from deep sequencing data using miRDeep
   "Friedlander MR, Chen W, Adamidi C, Maaskola J, Einspanier R, Knespel S, Rajewsky N"
   "Nat Biotechnol (2008) 26:407-415