Stem-loop cfa-mir-30e

Accession

MI0008023

Description

Canis lupus familiaris cfa-mir-30e precursor miRNA

Literature search

8 open access papers mention cfa-mir-30e
(9 sentences)

Sequence

3521804 reads, 6373.0 reads per million, 82 experiments

UGUAAACAUCCUUGACUGGAAGCUguaaggugcucagaggggCUUUCAGUCGGAUGUUUACAGC
(((((((((((..(((((((((((.(...(....)...).))))))))))))))))))))))..

Structure

--           UU           g aag u 
  UGUAAACAUCC  GACUGGAAGCU u   g g
  |||||||||||  ||||||||||| |   |  
  ACAUUUGUAGG  CUGACUUUCgg g   c c
CG           --           g aga u 

Annotation confidence High

Genome context

15: 2372685-2372748 [-]

Clustered miRNAs

1 other miRNA is < 10 kb from cfa-mir-30e

Mature cfa-miR-30e-5p

• Accession: MIMAT0051738
• Description: Canis lupus familiaris cfa-miR-30e-5p mature miRNA
• Sequence: 1 - UGUAAACAUCCUUGACUGGAAGCU - 24
• Evidence: experimental ; Illumina [1]

Mature cfa-miR-30e-3p

• Accession: MIMAT0006627
• Description: Canis lupus familiaris cfa-miR-30e-3p mature miRNA
• Sequence: 43 - CUUUCAGUCGGAUGUUUACAGC - 64
• Evidence: experimental ; Illumina [1]

References

1. PubMed ID: 18392026
   Discovering microRNAs from deep sequencing data using miRDeep
   "Friedlander MR, Chen W, Adamidi C, Maaskola J, Einspanier R, Knespel S, Rajewsky N"
   "Nat Biotechnol (2008) 26:407-415