Stem-loop cfa-mir-30c-1

Accession

MI0008024

Description

Canis lupus familiaris cfa-mir-30c-1 precursor miRNA

Sequence

3828744 reads, 5031.0 reads per million, 82 experiments

UGUAAACAUCCUACACUCUCAGCUgugagcucaagguggCUGGGAGAGGGUUGUUUACUCC
.(((((((.(((...(((((((((....(((...)))))))))))).))).)))))))...

Structure

--U       U   ACA         guga   c 
   GUAAACA CCU   CUCUCAGCU    gcu  
   ||||||| |||   |||||||||    ||| a
   CAUUUGU GGG   GAGGGUCgg    ugg  
CCU       U   --A         ----   a 

Annotation confidence High

Genome context

15: 2369429-2369489 [-]

Clustered miRNAs

1 other miRNA is < 10 kb from cfa-mir-30c-1

Mature cfa-miR-30c-5p

• Accession: MIMAT0006605
• Description: Canis lupus familiaris cfa-miR-30c-5p mature miRNA
• Sequence: 1 - UGUAAACAUCCUACACUCUCAGCU - 24
• Evidence: experimental ; Illumina [1]

Mature cfa-miR-30c-1-3p

• Accession: MIMAT0051715
• Description: Canis lupus familiaris cfa-miR-30c-1-3p mature miRNA
• Sequence: 40 - CUGGGAGAGGGUUGUUUACUCC - 61
• Evidence: experimental ; Illumina [1]

References

1. PubMed ID: 18392026
   Discovering microRNAs from deep sequencing data using miRDeep
   "Friedlander MR, Chen W, Adamidi C, Maaskola J, Einspanier R, Knespel S, Rajewsky N"
   "Nat Biotechnol (2008) 26:407-415