Stem-loop cfa-mir-135a-2

Accession

MI0008025

Description

Canis lupus familiaris cfa-mir-135a-2 precursor miRNA

Sequence

33879 reads, 77.0 reads per million, 73 experiments

uUAUGGCUUUUUAUUCCUAUGUGAUaguaauaaagucucaUGUAGGGAUGGAAGCCAUGAAA
(((((((((((.((((((((((((.(.(.....).).)))))))))))))))))))))))..

Structure

--           U            U g a 
  uUAUGGCUUUU AUUCCUAUGUGA a u a
  ||||||||||| |||||||||||| | | u
  AGUACCGAAGG UAGGGAUGUacu u a a
AA           -            c g a 

Annotation confidence High

Genome context

15: 37844448-37844509 [+]

Mature cfa-miR-135a-5p

• Accession: MIMAT0010196
• Description: Canis lupus familiaris cfa-miR-135a-5p mature miRNA
• Sequence: 2 - UAUGGCUUUUUAUUCCUAUGUGAU - 25
• Evidence: not_experimental

Mature cfa-miR-135a-3p

• Accession: MIMAT0006628
• Description: Canis lupus familiaris cfa-miR-135a-3p mature miRNA
• Sequence: 41 - UGUAGGGAUGGAAGCCAUGAAA - 62
• Evidence: experimental ; Illumina [1]

References

1. PubMed ID: 18392026
   Discovering microRNAs from deep sequencing data using miRDeep
   "Friedlander MR, Chen W, Adamidi C, Maaskola J, Einspanier R, Knespel S, Rajewsky N"
   "Nat Biotechnol (2008) 26:407-415