Stem-loop cfa-mir-383

Accession

MI0008026

Description

Canis lupus familiaris cfa-mir-383 precursor miRNA

Literature search

3 open access papers mention cfa-mir-383
(5 sentences)

Sequence

42783 reads, 105.0 reads per million, 72 experiments

AGAUCAGAAGGUGAUUGUGGCUUuggguggauauuaaucagCCACAGCACUGCCUGGUCAGA
.((((((..((((.((((((((...(((........)))))))))))))))..))))))...

Structure

--A      AA    A        Uug   gga 
   GAUCAG  GGUG UUGUGGCU   ggu   u
   ||||||  |||| ||||||||   |||    
   CUGGUC  UCAC GACACCga   cua   a
AGA      CG    -        ---   auu 

Annotation confidence High

Genome context

16: 40214645-40214706 [-]

Mature cfa-miR-383-5p

• Accession: MIMAT0006629
• Description: Canis lupus familiaris cfa-miR-383-5p mature miRNA
• Sequence: 1 - AGAUCAGAAGGUGAUUGUGGCUU - 23
• Evidence: experimental ; Illumina [1]

Mature cfa-miR-383-3p

• Accession: MIMAT0051740
• Description: Canis lupus familiaris cfa-miR-383-3p mature miRNA
• Sequence: 42 - CCACAGCACUGCCUGGUCAGA - 62
• Evidence: experimental ; Illumina [1]

References

1. PubMed ID: 18392026
   Discovering microRNAs from deep sequencing data using miRDeep
   "Friedlander MR, Chen W, Adamidi C, Maaskola J, Einspanier R, Knespel S, Rajewsky N"
   "Nat Biotechnol (2008) 26:407-415