Stem-loop cfa-mir-130a

Accession

MI0008029

Description

Canis lupus familiaris cfa-mir-130a precursor miRNA

Literature search

7 open access papers mention cfa-mir-130a
(9 sentences)

Sequence

155529 reads, 354.0 reads per million, 82 experiments

GCUCUUUUCACAUUGUGCUACUgucugcaccuaccacuagCAGUGCAAUGUUAAAAGGGCAU
((((((((.((((((((((.(((..............))).)))))))))).))))))))..

Structure

--        C          A   ucugca 
  GCUCUUUU ACAUUGUGCU CUg      c
  |||||||| |||||||||| |||       
  CGGGAAAA UGUAACGUGA gau      c
UA        U          C   caccau 

Annotation confidence High

Genome context

18: 39225427-39225488 [-]

Mature cfa-miR-130a-5p

• Accession: MIMAT0051742
• Description: Canis lupus familiaris cfa-miR-130a-5p mature miRNA
• Sequence: 1 - GCUCUUUUCACAUUGUGCUACU - 22
• Evidence: experimental ; Illumina [1]

Mature cfa-miR-130a-3p

• Accession: MIMAT0006631
• Description: Canis lupus familiaris cfa-miR-130a-3p mature miRNA
• Sequence: 41 - CAGUGCAAUGUUAAAAGGGCAU - 62
• Evidence: experimental ; Illumina [1]

References

1. PubMed ID: 18392026
   Discovering microRNAs from deep sequencing data using miRDeep
   "Friedlander MR, Chen W, Adamidi C, Maaskola J, Einspanier R, Knespel S, Rajewsky N"
   "Nat Biotechnol (2008) 26:407-415