Stem-loop cfa-mir-192

Accession

MI0008031

Description

Canis lupus familiaris cfa-mir-192 precursor miRNA

Literature search

18 open access papers mention cfa-mir-192
(46 sentences)

Sequence

2879196 reads, 5868.0 reads per million, 81 experiments

CUGACCUAUGAAUUGACAGCCAgugcucucaucucuccucuggCUGCCAAUUCCAUAGGUCACAG
.((((((((((((((.(((((((................))))))).))))).)))))))))...

Structure

--C         -     A       ugcucuc 
   UGACCUAUG AAUUG CAGCCAg       a
   ||||||||| ||||| |||||||        
   ACUGGAUAC UUAAC GUCgguc       u
GAC         C     C       uccucuc 

Annotation confidence High

Genome context

18: 53322283-53322347 [+]

Mature cfa-miR-192-5p

• Accession: MIMAT0006632
• Description: Canis lupus familiaris cfa-miR-192-5p mature miRNA
• Sequence: 1 - CUGACCUAUGAAUUGACAGCCA - 22
• Evidence: experimental ; Illumina [1]

Mature cfa-miR-192-3p

• Accession: MIMAT0051743
• Description: Canis lupus familiaris cfa-miR-192-3p mature miRNA
• Sequence: 44 - CUGCCAAUUCCAUAGGUCACAG - 65
• Evidence: experimental ; Illumina [1]

References

1. PubMed ID: 18392026
   Discovering microRNAs from deep sequencing data using miRDeep
   "Friedlander MR, Chen W, Adamidi C, Maaskola J, Einspanier R, Knespel S, Rajewsky N"
   "Nat Biotechnol (2008) 26:407-415