Stem-loop cfa-mir-7-1

Accession

MI0008033

Description

Canis lupus familiaris cfa-mir-7-1 precursor miRNA

Sequence

4126617 reads, 2813.0 reads per million, 82 experiments

UGGAAGACUAGUGAUUUUGUUGUUuuuagauaacuaaaucgaCAACAAAUCACAGUCUGCCAUA
(((.(((((.(((((((.(((((((((((....)))))..)))))))))))))))))).)))..

Structure

--   A     A       U      --     a 
  UGG AGACU GUGAUUU GUUGUU  uuuag u
  ||| ||||| ||||||| ||||||  |||||  
  ACC UCUGA CACUAAA CAACag  aaauc a
AU   G     -       -      cu     a 

Annotation confidence High

Genome context

1: 75811059-75811122 [+]

Mature cfa-miR-7-5p

• Accession: MIMAT0060782
• Description: Canis lupus familiaris cfa-miR-7-5p mature miRNA
• Sequence: 1 - UGGAAGACUAGUGAUUUUGUUGUU - 24
• Evidence: not_experimental

Mature cfa-miR-7-1-3p

• Accession: MIMAT0051746
• Description: Canis lupus familiaris cfa-miR-7-1-3p mature miRNA
• Sequence: 43 - CAACAAAUCACAGUCUGCCAUA - 64
• Evidence: not_experimental

References

1. PubMed ID: 18392026
   Discovering microRNAs from deep sequencing data using miRDeep
   "Friedlander MR, Chen W, Adamidi C, Maaskola J, Einspanier R, Knespel S, Rajewsky N"
   "Nat Biotechnol (2008) 26:407-415