Stem-loop cfa-mir-181c

Accession

MI0008034

Description

Canis lupus familiaris cfa-mir-181c precursor miRNA

Literature search

7 open access papers mention cfa-mir-181c
(25 sentences)

Sequence

1279188 reads, 4552.0 reads per million, 81 experiments

AACAUUCAACCUGUCGGUGAGUUugggcagcucaggcaaACCAUCGACCGUUGAGUGGACC
..((((((((..(((((((.(((((...........)))))))))))).))))))))....

Structure

--AA        CU       A     ggca 
    CAUUCAAC  GUCGGUG GUUug    g
    ||||||||  ||||||| |||||    c
    GUGAGUUG  CAGCUAC CAaac    u
CCAG        -C       -     ggac 

Annotation confidence High

Genome context

20: 49111581-49111641 [-]

Clustered miRNAs

1 other miRNA is < 10 kb from cfa-mir-181c

Mature cfa-miR-181c-5p

• Accession: MIMAT0006635
• Description: Canis lupus familiaris cfa-miR-181c-5p mature miRNA
• Sequence: 1 - AACAUUCAACCUGUCGGUGAGUU - 23
• Evidence: experimental ; Illumina [1]

Mature cfa-miR-181c-3p

• Accession: MIMAT0051749
• Description: Canis lupus familiaris cfa-miR-181c-3p mature miRNA
• Sequence: 40 - ACCAUCGACCGUUGAGUGGACC - 61
• Evidence: experimental ; Illumina [1]

References

1. PubMed ID: 18392026
   Discovering microRNAs from deep sequencing data using miRDeep
   "Friedlander MR, Chen W, Adamidi C, Maaskola J, Einspanier R, Knespel S, Rajewsky N"
   "Nat Biotechnol (2008) 26:407-415