Stem-loop cfa-mir-181d

Accession

MI0008035

Description

Canis lupus familiaris cfa-mir-181d precursor miRNA

Literature search

1 open access papers mention cfa-mir-181d
(1 sentences)

Sequence

155114 reads, 510.0 reads per million, 80 experiments

AACAUUCAUUGUUGUCGGUGGGUUgugaggacggaggccagaCCCACCGAGGGAUGAAUGUCAc
.(((((((((....((((((((((....((.(....))).))))))))))..)))))))))...

Structure

--A         GUUG          guga  a g 
   ACAUUCAUU    UCGGUGGGUU    gg c g
   |||||||||    ||||||||||    || |  
   UGUAAGUAG    AGCCACCCag    cc g a
cAC         --GG          ---a  - g 

Annotation confidence High

Genome context

20: 49111396-49111459 [-]

Clustered miRNAs

1 other miRNA is < 10 kb from cfa-mir-181d

Mature cfa-miR-181d-5p

• Accession: MIMAT0006636
• Description: Canis lupus familiaris cfa-miR-181d-5p mature miRNA
• Sequence: 1 - AACAUUCAUUGUUGUCGGUGGGUU - 24
• Evidence: experimental ; Illumina [1]

Mature cfa-miR-181d-3p

• Accession: MIMAT0051750
• Description: Canis lupus familiaris cfa-miR-181d-3p mature miRNA
• Sequence: 43 - CCCACCGAGGGAUGAAUGUCA - 63
• Evidence: experimental ; Illumina [1]

References

1. PubMed ID: 18392026
   Discovering microRNAs from deep sequencing data using miRDeep
   "Friedlander MR, Chen W, Adamidi C, Maaskola J, Einspanier R, Knespel S, Rajewsky N"
   "Nat Biotechnol (2008) 26:407-415