Stem-loop cfa-mir-191

Accession

MI0008037

Description

Canis lupus familiaris cfa-mir-191 precursor miRNA

Literature search

8 open access papers mention cfa-mir-191
(13 sentences)

Sequence

5826320 reads, 9392.0 reads per million, 82 experiments

CAACGGAAUCCCAAAAGCAGCUGUugucuccagagcauuccagCUGCGCUUGGAUUUCGUUCCC
.((((((((((.((..(((((((.(((.......)))...)))))))..))))))))))))...

Structure

--C          C  AA       --U   cu 
   AACGGAAUCC AA  GCAGCUG   ugu  c
   |||||||||| ||  |||||||   |||  c
   UUGCUUUAGG UU  CGUCgac   acg  a
CCC          -  CG       cuu   ag 

Annotation confidence High

Genome context

20: 40501313-40501376 [+]

Clustered miRNAs

1 other miRNA is < 10 kb from cfa-mir-191

Mature cfa-miR-191-5p

• Accession: MIMAT0006638
• Description: Canis lupus familiaris cfa-miR-191-5p mature miRNA
• Sequence: 1 - CAACGGAAUCCCAAAAGCAGCUGU - 24
• Evidence: experimental ; Illumina [1]

Mature cfa-miR-191-3p

• Accession: MIMAT0051752
• Description: Canis lupus familiaris cfa-miR-191-3p mature miRNA
• Sequence: 44 - CUGCGCUUGGAUUUCGUUCCC - 64
• Evidence: experimental ; Illumina [1]

References

1. PubMed ID: 18392026
   Discovering microRNAs from deep sequencing data using miRDeep
   "Friedlander MR, Chen W, Adamidi C, Maaskola J, Einspanier R, Knespel S, Rajewsky N"
   "Nat Biotechnol (2008) 26:407-415