Stem-loop cfa-mir-425

Accession

MI0008038

Description

Canis lupus familiaris cfa-mir-425 precursor miRNA

Literature search

3 open access papers mention cfa-mir-425
(7 sentences)

Sequence

704768 reads, 520.0 reads per million, 82 experiments

AAUGACACGAUCACUCCCGUUGAGUgggcacccaagaagcCAUCGGGAAUGUCGUGUCCGCCc
...(((((((.((.(((((....((((............))))))))).))))))))).....

Structure

--AAU       U  C     UUGA    gcacc 
     GACACGA CA UCCCG    GUgg     c
     ||||||| || |||||    ||||      
     CUGUGCU GU AGGGC    UACc     a
cCCGC       -  A     ----    gaaga 

Annotation confidence High

Genome context

20: 40501791-40501853 [+]

Clustered miRNAs

1 other miRNA is < 10 kb from cfa-mir-425

Mature cfa-miR-425-5p

• Accession: MIMAT0006639
• Description: Canis lupus familiaris cfa-miR-425-5p mature miRNA
• Sequence: 1 - AAUGACACGAUCACUCCCGUUGAGU - 25
• Evidence: experimental ; Illumina [1]

Mature cfa-miR-425-3p

• Accession: MIMAT0051753
• Description: Canis lupus familiaris cfa-miR-425-3p mature miRNA
• Sequence: 41 - CAUCGGGAAUGUCGUGUCCGCC - 62
• Evidence: experimental ; Illumina [1]

References

1. PubMed ID: 18392026
   Discovering microRNAs from deep sequencing data using miRDeep
   "Friedlander MR, Chen W, Adamidi C, Maaskola J, Einspanier R, Knespel S, Rajewsky N"
   "Nat Biotechnol (2008) 26:407-415