Stem-loop cfa-mir-23a

Accession

MI0008039

Description

Canis lupus familiaris cfa-mir-23a precursor miRNA

Literature search

13 open access papers mention cfa-mir-23a
(28 sentences)

Sequence

1628201 reads, 3662.0 reads per million, 82 experiments

guuccuggggaugggauuugcugccugucacaaAUCACAUUGCCAGGGAUUU
((((((((.((((.((((((.((.....)))))))).)))).))))))))..

Structure

--        g    g      c  c 
  guuccugg gaug gauuug ug c
  |||||||| |||| |||||| || u
  UAGGGACC UUAC CUAaac ac g
UU        G    A      -  u 

Annotation confidence Not enough data

Genome context

20: 49138446-49138497 [+]

Clustered miRNAs

2 other miRNAs are < 10 kb from cfa-mir-23a

Mature cfa-miR-23a-3p

• Accession: MIMAT0006640
• Description: Canis lupus familiaris cfa-miR-23a-3p mature miRNA
• Sequence: 34 - AUCACAUUGCCAGGGAUUU - 52
• Evidence: experimental ; Illumina [1]

References

1. PubMed ID: 18392026
   Discovering microRNAs from deep sequencing data using miRDeep
   "Friedlander MR, Chen W, Adamidi C, Maaskola J, Einspanier R, Knespel S, Rajewsky N"
   "Nat Biotechnol (2008) 26:407-415