Stem-loop cfa-mir-27a

Accession

MI0008040

Description

Canis lupus familiaris cfa-mir-27a precursor miRNA

Literature search

19 open access papers mention cfa-mir-27a
(45 sentences)

Sequence

6784975 reads, 13163.0 reads per million, 82 experiments

GGGCUUAGCUGCUUGUGAGCAgaguccacaccaagucgugUUCACAGUGGCUAAGUUCCG
(((((((((((((.(((((((((.(........).)).))))))))))))))))))))..

Structure

--             U       -  g cca 
  GGGCUUAGCUGCU GUGAGCA ga u   c
  ||||||||||||| ||||||| || |    
  CUUGAAUCGGUGA CACUUgu cu a   a
GC             -       g  g acc 

Annotation confidence High

Genome context

20: 49138667-49138726 [+]

Clustered miRNAs

2 other miRNAs are < 10 kb from cfa-mir-27a

Mature cfa-miR-27a-5p

• Accession: MIMAT0051754
• Description: Canis lupus familiaris cfa-miR-27a-5p mature miRNA
• Sequence: 1 - GGGCUUAGCUGCUUGUGAGCA - 21
• Evidence: experimental ; Illumina [1]

Mature cfa-miR-27a-3p

• Accession: MIMAT0006641
• Description: Canis lupus familiaris cfa-miR-27a-3p mature miRNA
• Sequence: 41 - UUCACAGUGGCUAAGUUCCG - 60
• Evidence: experimental ; Illumina [1]

References

1. PubMed ID: 18392026
   Discovering microRNAs from deep sequencing data using miRDeep
   "Friedlander MR, Chen W, Adamidi C, Maaskola J, Einspanier R, Knespel S, Rajewsky N"
   "Nat Biotechnol (2008) 26:407-415