miRBase entry: cfa-mir-24-2

Stem-loop cfa-mir-24-2

Accession

MI0008041

Description

Canis familiaris cfa-mir-24-2 precursor miRNA

Sequence

cgugccuacugagcugaaacacaguugauuugugcagacUGGCUCAGUUCAGCAGGAACAGG
.((.(((.(((((((((....(((((..........)))))..))))))))).))).))...

Structure

--c  g   a         aaca     gauu 
   gu ccu cugagcuga    caguu    u
   || ||| |||||||||    |||||     
   CA GGA GACUUGACU    GUcag    g
GGA  A   C         --CG     acgu

Annotation confidence Not enough data

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Genome context

chr20: 48620684-48620745 [+]

Clustered miRNAs

2 other miRNAs are < 10 kb from cfa-mir-24-2

Name	Accession	Chromosome	Start	End	Strand	Confidence

Database links

Mature cfa-miR-24

Accession	MIMAT0006614
Description	Canis familiaris cfa-miR-24 mature miRNA
Sequence	40 - UGGCUCAGUUCAGCAGGAACAGG - 62
Evidence	experimental Illumina [1]

References

PubMed ID: 18392026
Discovering microRNAs from deep sequencing data using miRDeep
"Friedlander MR, Chen W, Adamidi C, Maaskola J, Einspanier R, Knespel S, Rajewsky N"
"Nat Biotechnol (2008) 26:407-415