Stem-loop cfa-mir-24-2

Accession

MI0008041

Description

Canis lupus familiaris cfa-mir-24-2 precursor miRNA

Literature search

2 open access papers mention cfa-mir-24-2
(8 sentences)

Sequence

2571638 reads, 6061.0 reads per million, 82 experiments

cGUGCCUACUGAGCUGAAACACAGuugauuugugcagacUGGCUCAGUUCAGCAGGAACAGG
.((.(((.(((((((((....(((((..........)))))..))))))))).))).))...

Structure

--c  G   A         AACA     gauu 
   GU CCU CUGAGCUGA    CAGuu    u
   || ||| |||||||||    |||||     
   CA GGA GACUUGACU    GUcag    g
GGA  A   C         --CG     acgu 

Annotation confidence High

Genome context

20: 49138795-49138856 [+]

Clustered miRNAs

2 other miRNAs are < 10 kb from cfa-mir-24-2

Mature cfa-miR-24-2-5p

• Accession: MIMAT0051723
• Description: Canis lupus familiaris cfa-miR-24-2-5p mature miRNA
• Sequence: 2 - GUGCCUACUGAGCUGAAACACAG - 24
• Evidence: experimental ; Illumina [1]

Mature cfa-miR-24-3p

• Accession: MIMAT0006614
• Description: Canis lupus familiaris cfa-miR-24-3p mature miRNA
• Sequence: 40 - UGGCUCAGUUCAGCAGGAACAGG - 62
• Evidence: experimental ; Illumina [1]

References

1. PubMed ID: 18392026
   Discovering microRNAs from deep sequencing data using miRDeep
   "Friedlander MR, Chen W, Adamidi C, Maaskola J, Einspanier R, Knespel S, Rajewsky N"
   "Nat Biotechnol (2008) 26:407-415