Stem-loop cfa-mir-708

Accession

MI0008043

Description

Canis lupus familiaris cfa-mir-708 precursor miRNA

Literature search

3 open access papers mention cfa-mir-708
(7 sentences)

Sequence

428503 reads, 511.0 reads per million, 79 experiments

AAGGAGCUUACAAUCUAGCUGGgggugaacggcuugcacaugaacgCAACUAGACUGUGAGCUUCUAGA
.(((((((((((.((((((((........))))((((........)))).)))).)))))))))))...

Structure

--A           A    -----------------    Ggg 
   AGGAGCUUACA UCUA                 GCUG   g
   ||||||||||| ||||                 ||||    
   UCUUCGAGUGU AGAU                 cggc   u
AGA           C    CAACgcaaguacacguu    aag 

Annotation confidence High

Genome context

21: 19738865-19738933 [+]

Mature cfa-miR-708-5p

• Accession: MIMAT0006643
• Description: Canis lupus familiaris cfa-miR-708-5p mature miRNA
• Sequence: 1 - AAGGAGCUUACAAUCUAGCUGG - 22
• Evidence: experimental ; Illumina [1]

Mature cfa-miR-708-3p

• Accession: MIMAT0051757
• Description: Canis lupus familiaris cfa-miR-708-3p mature miRNA
• Sequence: 47 - CAACUAGACUGUGAGCUUCUAGA - 69
• Evidence: experimental ; Illumina [1]

References

1. PubMed ID: 18392026
   Discovering microRNAs from deep sequencing data using miRDeep
   "Friedlander MR, Chen W, Adamidi C, Maaskola J, Einspanier R, Knespel S, Rajewsky N"
   "Nat Biotechnol (2008) 26:407-415