Stem-loop cfa-mir-1838

Accession

MI0008044

Description

Canis lupus familiaris cfa-mir-1838 precursor miRNA

Sequence

19943 reads, 40.0 reads per million, 82 experiments

CCACCAGCUGGCGUUCCCUGGCgugggaacgagaggCAGGGGCUGCUGGCUGGAGGGA
((.((((((((((.((((((.(............).)))))).)))))))))).))..

Structure

--  A          U      G guggg 
  CC CCAGCUGGCG UCCCUG C     a
  || |||||||||| |||||| |      
  GG GGUCGGUCGU GGGGAC g     a
AG  A          C      g agagc 

Annotation confidence High

Genome context

21: 20795226-20795283 [+]

Mature cfa-miR-1838-5p

• Accession: MIMAT0006644
• Description: Canis lupus familiaris cfa-miR-1838-5p mature miRNA
• Sequence: 1 - CCACCAGCUGGCGUUCCCUGGC - 22
• Evidence: experimental ; Illumina [1]

Mature cfa-miR-1838-3p

• Accession: MIMAT0051758
• Description: Canis lupus familiaris cfa-miR-1838-3p mature miRNA
• Sequence: 37 - CAGGGGCUGCUGGCUGGAGGGA - 58
• Evidence: experimental ; Illumina [1]

References

1. PubMed ID: 18392026
   Discovering microRNAs from deep sequencing data using miRDeep
   "Friedlander MR, Chen W, Adamidi C, Maaskola J, Einspanier R, Knespel S, Rajewsky N"
   "Nat Biotechnol (2008) 26:407-415