Stem-loop cfa-mir-139

Accession

MI0008045

Description

Canis lupus familiaris cfa-mir-139 precursor miRNA

Literature search

9 open access papers mention cfa-mir-139
(12 sentences)

Sequence

5017 reads, 29.0 reads per million, 73 experiments

CUACAGUGCACGUGUCUCCAGUguggcuccgaggcUGGAGACGCGGCCCUGUUGGAA
((((((.((.((((((((((((.(.(...).).)))))))))))))).))).)))..

Structure

--   -   U  A            g g c 
  CUA CAG GC CGUGUCUCCAGU u g  
  ||| ||| || |||||||||||| | | u
  GGU GUC CG GCGCAGAGGUcg a c  
AA   U   C  -            g g c 

Annotation confidence High

Genome context

21: 25806181-25806237 [+]

Mature cfa-miR-139-5p

• Accession: MIMAT0051759
• Description: Canis lupus familiaris cfa-miR-139-5p mature miRNA
• Sequence: 1 - CUACAGUGCACGUGUCUCCAGU - 22
• Evidence: experimental ; Illumina [1]

Mature cfa-miR-139-3p

• Accession: MIMAT0006645
• Description: Canis lupus familiaris cfa-miR-139-3p mature miRNA
• Sequence: 36 - UGGAGACGCGGCCCUGUUGGAA - 57
• Evidence: experimental ; Illumina [1]

References

1. PubMed ID: 18392026
   Discovering microRNAs from deep sequencing data using miRDeep
   "Friedlander MR, Chen W, Adamidi C, Maaskola J, Einspanier R, Knespel S, Rajewsky N"
   "Nat Biotechnol (2008) 26:407-415