Stem-loop cfa-mir-138b

Accession

MI0008047

Description

Canis lupus familiaris cfa-mir-138b precursor miRNA

Sequence

39355 reads, 91.0 reads per million, 69 experiments

AGCUGGUGUUGUGAAUCAUGCCGacgagcagcgcauccucuuacccgGCUAUUUCACGACACCAGGGUU
..(((((((((((((....((((..(((.((......)))))...))))...)))))))))))))....

Structure

--AG             UCAU    -ac   c  cg 
    CUGGUGUUGUGAA    GCCG   gag ag  c
    |||||||||||||    ||||   ||| ||   
    GACCACAGCACUU    CGgc   uuc uc  a
UUGG             -UAU    cca   -  cu 

Annotation confidence High

Genome context

2: 59993298-59993366 [-]

Mature cfa-miR-138b-5p

• Accession: MIMAT0006646
• Description: Canis lupus familiaris cfa-miR-138b-5p mature miRNA
• Sequence: 1 - AGCUGGUGUUGUGAAUCAUGCCG - 23
• Evidence: experimental ; Illumina [1]

Mature cfa-miR-138b-3p

• Accession: MIMAT0051760
• Description: Canis lupus familiaris cfa-miR-138b-3p mature miRNA
• Sequence: 48 - GCUAUUUCACGACACCAGGGUU - 69
• Evidence: experimental ; Illumina [1]

References

1. PubMed ID: 18392026
   Discovering microRNAs from deep sequencing data using miRDeep
   "Friedlander MR, Chen W, Adamidi C, Maaskola J, Einspanier R, Knespel S, Rajewsky N"
   "Nat Biotechnol (2008) 26:407-415