Stem-loop cfa-mir-15a

Accession

MI0008048

Description

Canis lupus familiaris cfa-mir-15a precursor miRNA

Literature search

10 open access papers mention cfa-mir-15a
(17 sentences)

Sequence

130105 reads, 272.0 reads per million, 80 experiments

UAGCAGCACAUAAUGGUUUGUGgauuuugaaaaggugCAGGCCAUAUUGUGCUGCCUCA
..((((((((..((((((((((.............))))))))))..))))))))....

Structure

--UA        UA          gauuu 
    GCAGCACA  AUGGUUUGUG     u
    ||||||||  ||||||||||     g
    CGUCGUGU  UACCGGACgu     a
ACUC        UA          ggaaa 

Annotation confidence High

Genome context

22: 1834523-1834581 [+]

Clustered miRNAs

1 other miRNA is < 10 kb from cfa-mir-15a

Mature cfa-miR-15a-5p

• Accession: MIMAT0006647
• Description: Canis lupus familiaris cfa-miR-15a-5p mature miRNA
• Sequence: 1 - UAGCAGCACAUAAUGGUUUGUG - 22
• Evidence: experimental ; Illumina [1]

Mature cfa-miR-15a-3p

• Accession: MIMAT0051761
• Description: Canis lupus familiaris cfa-miR-15a-3p mature miRNA
• Sequence: 38 - CAGGCCAUAUUGUGCUGCCUCA - 59
• Evidence: experimental ; Illumina [1]

References

1. PubMed ID: 18392026
   Discovering microRNAs from deep sequencing data using miRDeep
   "Friedlander MR, Chen W, Adamidi C, Maaskola J, Einspanier R, Knespel S, Rajewsky N"
   "Nat Biotechnol (2008) 26:407-415