Stem-loop cfa-mir-16-1

Accession

MI0008049

Description

Canis lupus familiaris cfa-mir-16-1 precursor miRNA

Literature search

1 open access papers mention cfa-mir-16-1
(1 sentences)

Sequence

1858541 reads, 3479.0 reads per million, 82 experiments

UAGCAGCACGUAAAUAUUGGCGuuaagauucuaaaauuaucuCCAGUAUUAACUGUGCUGCUGAA
(((((((((((.((((((((.(.(((..........))).).)))))))).)).)))))))))..

Structure

--         -  A        C u   gauu 
  UAGCAGCAC GU AAUAUUGG G uaa    c
  ||||||||| || |||||||| | |||     
  GUCGUCGUG CA UUAUGACC c auu    u
AA         U  A        u u   aaaa 

Annotation confidence High

Genome context

22: 1834663-1834727 [+]

Clustered miRNAs

1 other miRNA is < 10 kb from cfa-mir-16-1

Mature cfa-miR-16-5p

• Accession: MIMAT0006648
• Description: Canis lupus familiaris cfa-miR-16-5p mature miRNA
• Sequence: 1 - UAGCAGCACGUAAAUAUUGGCG - 22
• Evidence: experimental ; Illumina [1]

Mature cfa-miR-16-1-3p

• Accession: MIMAT0051762
• Description: Canis lupus familiaris cfa-miR-16-1-3p mature miRNA
• Sequence: 43 - CCAGUAUUAACUGUGCUGCUGAA - 65
• Evidence: experimental ; Illumina [1]

References

1. PubMed ID: 18392026
   Discovering microRNAs from deep sequencing data using miRDeep
   "Friedlander MR, Chen W, Adamidi C, Maaskola J, Einspanier R, Knespel S, Rajewsky N"
   "Nat Biotechnol (2008) 26:407-415