Stem-loop cfa-mir-92a-1

Accession

MI0008055

Description

Canis lupus familiaris cfa-mir-92a-1 precursor miRNA

Literature search

2 open access papers mention cfa-mir-92a-1
(2 sentences)

Sequence

6619360 reads, 8613.0 reads per million, 82 experiments

AGGUUGGGAUCGGUUGCAAUGCUguguuucuguauggUAUUGCACUUGUCCCGGCCUGU
((((((((((.(((.(((((((((((......)))))))))))))).))))))))))..

Structure

--          C   U           uu 
  AGGUUGGGAU GGU GCAAUGCUgug  u
  |||||||||| ||| |||||||||||   
  UCCGGCCCUG UCA CGUUAUgguau  c
UG          U   -           gu 

Annotation confidence High

Genome context

22: 42879963-42880021 [+]

Clustered miRNAs

5 other miRNAs are < 10 kb from cfa-mir-92a-1

Mature cfa-miR-92a-1-5p

• Accession: MIMAT0051767
• Description: Canis lupus familiaris cfa-miR-92a-1-5p mature miRNA
• Sequence: 1 - AGGUUGGGAUCGGUUGCAAUGCU - 23
• Evidence: experimental ; Illumina [1]

Mature cfa-miR-92a-3p

• Accession: MIMAT0006653
• Description: Canis lupus familiaris cfa-miR-92a-3p mature miRNA
• Sequence: 38 - UAUUGCACUUGUCCCGGCCUGU - 59
• Evidence: experimental ; Illumina [1]

References

1. PubMed ID: 18392026
   Discovering microRNAs from deep sequencing data using miRDeep
   "Friedlander MR, Chen W, Adamidi C, Maaskola J, Einspanier R, Knespel S, Rajewsky N"
   "Nat Biotechnol (2008) 26:407-415