Stem-loop cfa-mir-138a

Accession

MI0008056

Description

Canis lupus familiaris cfa-mir-138a precursor miRNA

Sequence

664330 reads, 1383.0 reads per million, 75 experiments

AGCUGGUGUUGUGAAUCAGGCCGUugccaaucagagaacgGCUACUUCACAACACCAGGGUc
..(((((((((((((...(((((((..(.....)..)))))))..)))))))))))))....

Structure

--AG             UCA       gc a 
    CUGGUGUUGUGAA   GGCCGUu  c a
    |||||||||||||   |||||||  | u
    GACCACAACACUU   UCGgcaa  g c
cUGG             -CA       ga a 

Annotation confidence High

Genome context

23: 2472862-2472923 [-]

Mature cfa-miR-138a-5p

• Accession: MIMAT0006654
• Description: Canis lupus familiaris cfa-miR-138a-5p mature miRNA
• Sequence: 1 - AGCUGGUGUUGUGAAUCAGGCCGU - 24
• Evidence: experimental ; Illumina [1]

Mature cfa-miR-138a-3p

• Accession: MIMAT0051769
• Description: Canis lupus familiaris cfa-miR-138a-3p mature miRNA
• Sequence: 41 - GCUACUUCACAACACCAGGGU - 61
• Evidence: experimental ; Illumina [1]

References

1. PubMed ID: 18392026
   Discovering microRNAs from deep sequencing data using miRDeep
   "Friedlander MR, Chen W, Adamidi C, Maaskola J, Einspanier R, Knespel S, Rajewsky N"
   "Nat Biotechnol (2008) 26:407-415