Stem-loop cfa-mir-499

Accession

MI0008059

Description

Canis lupus familiaris cfa-mir-499 precursor miRNA

Literature search

7 open access papers mention cfa-mir-499
(50 sentences)

Sequence

964719 reads, 916.0 reads per million, 82 experiments

UUAAGACUUGCAGUGAUGUUUAacuccucuccacgugAACAUCACAGCAAGUCUGUGCU
...((((((((.((((((((((.............)))))))))).)))))))).....

Structure

--UUA        A          acucc 
     AGACUUGC GUGAUGUUUA     u
     |||||||| ||||||||||     c
     UCUGAACG CACUACAAgu     u
UCGUG        A          gcacc 

Annotation confidence High

Genome context

24: 24721505-24721563 [+]

Mature cfa-miR-499-5p

• Accession: MIMAT0006655
• Description: Canis lupus familiaris cfa-miR-499-5p mature miRNA
• Sequence: 1 - UUAAGACUUGCAGUGAUGUUUA - 22
• Evidence: experimental ; Illumina [1]

Mature cfa-miR-499-3p

• Accession: MIMAT0051770
• Description: Canis lupus familiaris cfa-miR-499-3p mature miRNA
• Sequence: 38 - AACAUCACAGCAAGUCUGUGCU - 59
• Evidence: experimental ; Illumina [1]

References

1. PubMed ID: 18392026
   Discovering microRNAs from deep sequencing data using miRDeep
   "Friedlander MR, Chen W, Adamidi C, Maaskola J, Einspanier R, Knespel S, Rajewsky N"
   "Nat Biotechnol (2008) 26:407-415