Stem-loop cfa-mir-1-1

Accession

MI0008060

Description

Canis familiaris cfa-mir-1-1 precursor miRNA

Sequence

cauacuucuuuauaugcccauauggaccugcuaagcuaUGGAAUGUAAAGAAGUAUGUA
(((((((((((((((..((((((((.....)))...))))).)))))))))))))))..

Structure

--               gc     ---   a 
  cauacuucuuuauau  ccaua   ugg c
  |||||||||||||||  |||||   ||| c
  GUAUGAAGAAAUGUA  GGUau   auc u
AU               -A     cga   g 

Annotation confidence Not enough data

Genome context

chr24: 46481078-46481136 [+]

Clustered miRNAs

1 other miRNA is < 10 kb from cfa-mir-1-1

Mature cfa-miR-1

• Accession: MIMAT0006656
• Description: Canis familiaris cfa-miR-1 mature miRNA
• Sequence: 39 - UGGAAUGUAAAGAAGUAUGUA - 59
• Evidence: experimental ; Illumina [1]

References

1. PubMed ID: 18392026
   Discovering microRNAs from deep sequencing data using miRDeep
   "Friedlander MR, Chen W, Adamidi C, Maaskola J, Einspanier R, Knespel S, Rajewsky N"
   "Nat Biotechnol (2008) 26:407-415