miRBase entry: cfa-mir-1-1

Stem-loop cfa-mir-1-1

Accession

MI0008060

Description

Canis familiaris cfa-mir-1-1 precursor miRNA

Sequence

cauacuucuuuauaugcccauauggaccugcuaagcuaUGGAAUGUAAAGAAGUAUGUA
(((((((((((((((..((((((((.....)))...))))).)))))))))))))))..

Structure

--               gc     ---   a 
  cauacuucuuuauau  ccaua   ugg c
  |||||||||||||||  |||||   ||| c
  GUAUGAAGAAAUGUA  GGUau   auc u
AU               -A     cga   g

Annotation confidence Not enough data

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Genome context

chr24: 46481078-46481136 [+]

Clustered miRNAs

1 other miRNA is < 10 kb from cfa-mir-1-1

Name	Accession	Chromosome	Start	End	Strand	Confidence

Database links

Mature cfa-miR-1

Accession	MIMAT0006656
Description	Canis familiaris cfa-miR-1 mature miRNA
Sequence	39 - UGGAAUGUAAAGAAGUAUGUA - 59
Evidence	experimental Illumina [1]

References

PubMed ID: 18392026
Discovering microRNAs from deep sequencing data using miRDeep
"Friedlander MR, Chen W, Adamidi C, Maaskola J, Einspanier R, Knespel S, Rajewsky N"
"Nat Biotechnol (2008) 26:407-415