Stem-loop cfa-mir-1-1

Accession

MI0008060

Description

Canis lupus familiaris cfa-mir-1-1 precursor miRNA

Literature search

2 open access papers mention cfa-mir-1-1
(2 sentences)

Sequence

24495999 reads, 16112.0 reads per million, 82 experiments

CAUACUUCUUUAUAUGCCCAUAuggaccugcuaagcuaUGGAAUGUAAAGAAGUAUGUA
(((((((((((((((..((((((((.....)))...))))).)))))))))))))))..

Structure

--               GC     ---   a 
  CAUACUUCUUUAUAU  CCAUA   ugg c
  |||||||||||||||  |||||   ||| c
  GUAUGAAGAAAUGUA  GGUau   auc u
AU               -A     cga   g 

Annotation confidence High

Genome context

24: 47351556-47351614 [+]

Clustered miRNAs

1 other miRNA is < 10 kb from cfa-mir-1-1

Mature cfa-miR-1-1-5p

• Accession: MIMAT0060856
• Description: Canis lupus familiaris cfa-miR-1-1-5p mature miRNA
• Sequence: 1 - CAUACUUCUUUAUAUGCCCAUA - 22
• Evidence: experimental ; Illumina [1]

Mature cfa-miR-1-3p

• Accession: MIMAT0006656
• Description: Canis lupus familiaris cfa-miR-1-3p mature miRNA
• Sequence: 39 - UGGAAUGUAAAGAAGUAUGUA - 59
• Evidence: experimental ; Illumina [1]

References

1. PubMed ID: 18392026
   Discovering microRNAs from deep sequencing data using miRDeep
   "Friedlander MR, Chen W, Adamidi C, Maaskola J, Einspanier R, Knespel S, Rajewsky N"
   "Nat Biotechnol (2008) 26:407-415