Stem-loop cfa-mir-320

Accession

MI0008063

Description

Canis lupus familiaris cfa-mir-320 precursor miRNA

Literature search

4 open access papers mention cfa-mir-320
(4 sentences)

Sequence

803687 reads, 1998.0 reads per million, 82 experiments

GCCUUCUCUUCCCGGUUCUUCCcggagucgggAAAAGCUGGGUUGAGAGGGCGA
((((((((..(((((((.((((((....)))))).)))))))..))))))))..

Structure

--        UU       C      g 
  GCCUUCUC  CCCGGUU UUCCcg a
  ||||||||  ||||||| ||||||  
  CGGGAGAG  GGGUCGA AAgggc g
AG        UU       A      u 

Annotation confidence High

Genome context

25: 35228151-35228204 [+]

Mature cfa-miR-320-5p

• Accession: MIMAT0051774
• Description: Canis lupus familiaris cfa-miR-320-5p mature miRNA
• Sequence: 1 - GCCUUCUCUUCCCGGUUCUUCC - 22
• Evidence: experimental ; Illumina [1]

Mature cfa-miR-320-3p

• Accession: MIMAT0006658
• Description: Canis lupus familiaris cfa-miR-320-3p mature miRNA
• Sequence: 33 - AAAAGCUGGGUUGAGAGGGCGA - 54
• Evidence: experimental ; Illumina [1]

References

1. PubMed ID: 18392026
   Discovering microRNAs from deep sequencing data using miRDeep
   "Friedlander MR, Chen W, Adamidi C, Maaskola J, Einspanier R, Knespel S, Rajewsky N"
   "Nat Biotechnol (2008) 26:407-415