Stem-loop cfa-mir-130b

Accession

MI0008064

Description

Canis lupus familiaris cfa-mir-130b precursor miRNA

Literature search

6 open access papers mention cfa-mir-130b
(32 sentences)

Sequence

66089 reads, 60.0 reads per million, 82 experiments

ACUCUUUCCCUGUUGCACUACUgugggccgcugggaagCAGUGCAAUGAUGAAAGGGCAU
.(((((((..(((((((((...((...((....))..)))))))))))..)))))))...

Structure

--A       CC         ACU  ggg  g 
   CUCUUUC  UGUUGCACU   gu   cc c
   |||||||  |||||||||   ||   ||  
   GGGAAAG  GUAACGUGA   Cg   gg u
UAC       UA         ---  -aa  g 

Annotation confidence High

Genome context

26: 32330166-32330225 [+]

Clustered miRNAs

1 other miRNA is < 10 kb from cfa-mir-130b

Mature cfa-miR-130b-5p

• Accession: MIMAT0051775
• Description: Canis lupus familiaris cfa-miR-130b-5p mature miRNA
• Sequence: 1 - ACUCUUUCCCUGUUGCACUACU - 22
• Evidence: experimental ; Illumina [1]

Mature cfa-miR-130b-3p

• Accession: MIMAT0006659
• Description: Canis lupus familiaris cfa-miR-130b-3p mature miRNA
• Sequence: 39 - CAGUGCAAUGAUGAAAGGGCAU - 60
• Evidence: experimental ; Illumina [1]

References

1. PubMed ID: 18392026
   Discovering microRNAs from deep sequencing data using miRDeep
   "Friedlander MR, Chen W, Adamidi C, Maaskola J, Einspanier R, Knespel S, Rajewsky N"
   "Nat Biotechnol (2008) 26:407-415