Stem-loop cfa-mir-1306

Accession

MI0008066

Description

Canis lupus familiaris cfa-mir-1306 precursor miRNA

Literature search

1 open access papers mention cfa-mir-1306
(2 sentences)

Sequence

62138 reads, 78.0 reads per million, 81 experiments

CCACCUCCCCUGCAAACGUCCAGugaugcagagguaaugGACGUUGGCUCUGGUGGUG
.((((.((...((.((((((((...((......))..)))))))).))...)).))))

Structure

C    U  CCU  A        Gug  gc 
 CACC CC   GC AACGUCCA   au  a
 |||| ||   || ||||||||   ||   
 GUGG GG   CG UUGCAGgu   ug  g
-    U  UCU  G        -aa  ga 

Annotation confidence Medium

Genome context

26: 30659720-30659777 [-]

Mature cfa-miR-1306-5p

• Accession: MIMAT0006661
• Description: Canis lupus familiaris cfa-miR-1306-5p mature miRNA
• Sequence: 1 - CCACCUCCCCUGCAAACGUCCAG - 23
• Evidence: experimental ; Illumina [1]

Mature cfa-miR-1306-3p

• Accession: MIMAT0051777
• Description: Canis lupus familiaris cfa-miR-1306-3p mature miRNA
• Sequence: 40 - GACGUUGGCUCUGGUGGUG - 58
• Evidence: experimental ; Illumina [1]

References

1. PubMed ID: 18392026
   Discovering microRNAs from deep sequencing data using miRDeep
   "Friedlander MR, Chen W, Adamidi C, Maaskola J, Einspanier R, Knespel S, Rajewsky N"
   "Nat Biotechnol (2008) 26:407-415