Stem-loop cfa-mir-196a-2

Accession

MI0008068

Description

Canis lupus familiaris cfa-mir-196a-2 precursor miRNA

Sequence

135088 reads, 195.0 reads per million, 64 experiments

UAGGUAGUUUCAUGUUGUUGGGAuugaguuuugaacUCGGCAACAAGAAACUGCCUGAG
(((((((((((.((((((((((.((........)))))))))))).)))))))))))..

Structure

--           A          A  gag 
  UAGGUAGUUUC UGUUGUUGGG uu   u
  ||||||||||| |||||||||| ||    
  GUCCGUCAAAG ACAACGGCUc aa   u
GA           A          -  guu 

Annotation confidence High

Genome context

27: 1274383-1274441 [-]

Mature cfa-miR-196a-2-5p

• Accession: MIMAT0061632
• Description: Canis lupus familiaris cfa-miR-196a-2-5p mature miRNA
• Sequence: 1 - UAGGUAGUUUCAUGUUGUUGGGA - 23
• Evidence: experimental ; Illumina [1]

Mature cfa-miR-196a-2-3p

• Accession: MIMAT0051778
• Description: Canis lupus familiaris cfa-miR-196a-2-3p mature miRNA
• Sequence: 37 - UCGGCAACAAGAAACUGCCUGAG - 59
• Evidence: not_experimental

References

1. PubMed ID: 18392026
   Discovering microRNAs from deep sequencing data using miRDeep
   "Friedlander MR, Chen W, Adamidi C, Maaskola J, Einspanier R, Knespel S, Rajewsky N"
   "Nat Biotechnol (2008) 26:407-415