Stem-loop cfa-mir-148b

Accession

MI0008069

Description

Canis lupus familiaris cfa-mir-148b precursor miRNA

Literature search

2 open access papers mention cfa-mir-148b
(5 sentences)

Sequence

1458710 reads, 1884.0 reads per million, 82 experiments

GAAGUUCUGUUAUACACUCAGGCUguggcucucugaaagUCAGUGCAUCACAGAACUUUGU
((((((((((.((.((((..((((.............)))))))).)).))))))))))..

Structure

--          U  A    CA    guggc 
  GAAGUUCUGU AU CACU  GGCU     u
  |||||||||| || ||||  ||||     c
  UUUCAAGACA UA GUGA  CUga     u
UG          C  C    --    aaguc 

Annotation confidence High

Genome context

27: 972110-972170 [-]

Mature cfa-miR-148b-5p

• Accession: MIMAT0051780
• Description: Canis lupus familiaris cfa-miR-148b-5p mature miRNA
• Sequence: 1 - GAAGUUCUGUUAUACACUCAGGCU - 24
• Evidence: experimental ; Illumina [1]

Mature cfa-miR-148b-3p

• Accession: MIMAT0006663
• Description: Canis lupus familiaris cfa-miR-148b-3p mature miRNA
• Sequence: 40 - UCAGUGCAUCACAGAACUUUGU - 61
• Evidence: experimental ; Illumina [1]

References

1. PubMed ID: 18392026
   Discovering microRNAs from deep sequencing data using miRDeep
   "Friedlander MR, Chen W, Adamidi C, Maaskola J, Einspanier R, Knespel S, Rajewsky N"
   "Nat Biotechnol (2008) 26:407-415