Stem-loop cfa-mir-1307

Accession

MI0008071

Description

Canis lupus familiaris cfa-mir-1307 precursor miRNA

Literature search

1 open access papers mention cfa-mir-1307
(1 sentences)

Sequence

88476 reads, 150.0 reads per million, 80 experiments

CGACCGGACCUCGACCGGCUcgucuauguugccaaucgACUCGGCGUGGCGUCGGUCGUG
(((((((.((.((.((((.(((..............))).)))))).))..)))))))..

Structure

--       -A  U  A    C   ucuaug 
  CGACCGG  CC CG CCGG Ucg      u
  |||||||  || || |||| |||       
  GCUGGCU  GG GC GGCU Agc      u
GU       GC  U  -    C   uaaccg 

Annotation confidence High

Genome context

28: 16242162-16242221 [-]

Mature cfa-miR-1307-5p

• Accession: MIMAT0051782
• Description: Canis lupus familiaris cfa-miR-1307-5p mature miRNA
• Sequence: 1 - CGACCGGACCUCGACCGGCU - 20
• Evidence: experimental ; Illumina [1]

Mature cfa-miR-1307-3p

• Accession: MIMAT0006665
• Description: Canis lupus familiaris cfa-miR-1307-3p mature miRNA
• Sequence: 39 - ACUCGGCGUGGCGUCGGUCGUG - 60
• Evidence: experimental ; Illumina [1]

References

1. PubMed ID: 18392026
   Discovering microRNAs from deep sequencing data using miRDeep
   "Friedlander MR, Chen W, Adamidi C, Maaskola J, Einspanier R, Knespel S, Rajewsky N"
   "Nat Biotechnol (2008) 26:407-415