Stem-loop cfa-mir-146b

Accession

MI0008073

Description

Canis lupus familiaris cfa-mir-146b precursor miRNA

Literature search

9 open access papers mention cfa-mir-146b
(13 sentences)

Sequence

882318 reads, 2771.0 reads per million, 81 experiments

UGAGAACUGAAUUCCAUAGGCUGUgagcuugagcaaacAGCCUAGGGACUCAGUUCUGGUG
(.((((((((.((((.((((((((..((....))..)))))))))))).)))))))).)..

Structure

-- G        A    A        ga  u 
  U AGAACUGA UUCC UAGGCUGU  gc u
  | |||||||| |||| ||||||||  ||  
  G UCUUGACU AGGG AUCCGAca  cg g
GU G        C    -        aa  a 

Annotation confidence High

Genome context

28: 15414567-15414627 [+]

Mature cfa-miR-146b-5p

• Accession: MIMAT0006667
• Description: Canis lupus familiaris cfa-miR-146b-5p mature miRNA
• Sequence: 1 - UGAGAACUGAAUUCCAUAGGCUGU - 24
• Evidence: experimental ; Illumina [1]

Mature cfa-miR-146b-3p

• Accession: MIMAT0051784
• Description: Canis lupus familiaris cfa-miR-146b-3p mature miRNA
• Sequence: 39 - AGCCUAGGGACUCAGUUCUGGUG - 61
• Evidence: experimental ; Illumina [1]

References

1. PubMed ID: 18392026
   Discovering microRNAs from deep sequencing data using miRDeep
   "Friedlander MR, Chen W, Adamidi C, Maaskola J, Einspanier R, Knespel S, Rajewsky N"
   "Nat Biotechnol (2008) 26:407-415