Stem-loop cfa-mir-99a-1

Accession

MI0008075

Description

Canis lupus familiaris cfa-mir-99a-1 precursor miRNA

Sequence

22604302 reads, 17215.0 reads per million, 82 experiments

AACCCGUAGAUCCGAUCUUGUGgugaaguggacggcaCAAGCUCGCUUCUAUGGGUCUG
.(((((((((..(((.((((((.((.......)).)))))).)))..)))))))))...

Structure

--A         UC   U      g  aa 
   ACCCGUAGA  CGA CUUGUG ug  g
   |||||||||  ||| |||||| ||  u
   UGGGUAUCU  GCU GAACac gc  g
GUC         UC   C      g  ag 

Annotation confidence High

Genome context

31: 13287989-13288047 [+]

Clustered miRNAs

1 other miRNA is < 10 kb from cfa-mir-99a-1

Mature cfa-miR-99a-5p

• Accession: MIMAT0006668
• Description: Canis lupus familiaris cfa-miR-99a-5p mature miRNA
• Sequence: 1 - AACCCGUAGAUCCGAUCUUGUG - 22
• Evidence: experimental ; Illumina [1]

Mature cfa-miR-99a-1-3p

• Accession: MIMAT0051785
• Description: Canis lupus familiaris cfa-miR-99a-1-3p mature miRNA
• Sequence: 38 - CAAGCUCGCUUCUAUGGGUCUG - 59
• Evidence: experimental ; Illumina [1]

References

1. PubMed ID: 18392026
   Discovering microRNAs from deep sequencing data using miRDeep
   "Friedlander MR, Chen W, Adamidi C, Maaskola J, Einspanier R, Knespel S, Rajewsky N"
   "Nat Biotechnol (2008) 26:407-415