Stem-loop cfa-mir-125b-2

Accession

MI0008077

Description

Canis lupus familiaris cfa-mir-125b-2 precursor miRNA

Literature search

2 open access papers mention cfa-mir-125b-2
(2 sentences)

Sequence

2561164 reads, 5662.0 reads per million, 82 experiments

UCCCUGAGACCCUAACUUGUGAgguauuuuaguaacaucACAAGUCAGGCUCUUGGGACCU
..(((((((.(((.((((((((.((.........)).)))))))).))).)))))))....

Structure

--UC       C   A        g  auu 
    CCUGAGA CCU ACUUGUGA gu   u
    ||||||| ||| |||||||| ||   u
    GGGUUCU GGA UGAACAcu ca   a
UCCA       C   C        a  aug 

Annotation confidence High

Genome context

31: 13334446-13334506 [+]

Mature cfa-miR-125b-5p

• Accession: MIMAT0006670
• Description: Canis lupus familiaris cfa-miR-125b-5p mature miRNA
• Sequence: 1 - UCCCUGAGACCCUAACUUGUGA - 22
• Evidence: experimental ; Illumina [1]

Mature cfa-miR-125b-2-3p

• Accession: MIMAT0051788
• Description: Canis lupus familiaris cfa-miR-125b-2-3p mature miRNA
• Sequence: 40 - ACAAGUCAGGCUCUUGGGACCU - 61
• Evidence: experimental ; Illumina [1]

References

1. PubMed ID: 18392026
   Discovering microRNAs from deep sequencing data using miRDeep
   "Friedlander MR, Chen W, Adamidi C, Maaskola J, Einspanier R, Knespel S, Rajewsky N"
   "Nat Biotechnol (2008) 26:407-415