Stem-loop cfa-mir-155

Accession

MI0008078

Description

Canis lupus familiaris cfa-mir-155 precursor miRNA

Literature search

33 open access papers mention cfa-mir-155
(89 sentences)

Sequence

1899310 reads, 1137.0 reads per million, 78 experiments

UUAAUGCUAAUCGUGAUAGGGGUuuuuaccuccgacugaCUCCUACAUGUUAGCAUUAACA
((((((((((.((((.((((((((.............))))))))))))))))))))))..

Structure

--          U    A        uuuac 
  UUAAUGCUAA CGUG UAGGGGUu     c
  |||||||||| |||| ||||||||     u
  AAUUACGAUU GUAC AUCCUCag     c
AC          -    -        ucagc 

Annotation confidence High

Genome context

31: 21132843-21132903 [+]

Mature cfa-miR-155-5p

• Accession: MIMAT0006671
• Description: Canis lupus familiaris cfa-miR-155-5p mature miRNA
• Sequence: 1 - UUAAUGCUAAUCGUGAUAGGGGU - 23
• Evidence: experimental ; Illumina [1]

Mature cfa-miR-155-3p

• Accession: MIMAT0051790
• Description: Canis lupus familiaris cfa-miR-155-3p mature miRNA
• Sequence: 40 - CUCCUACAUGUUAGCAUUAACA - 61
• Evidence: experimental ; Illumina [1]

References

1. PubMed ID: 18392026
   Discovering microRNAs from deep sequencing data using miRDeep
   "Friedlander MR, Chen W, Adamidi C, Maaskola J, Einspanier R, Knespel S, Rajewsky N"
   "Nat Biotechnol (2008) 26:407-415